Babar Azam's side had been in charge after claiming a handy first-innings lead of 149 in the first match of the two-Test series.
England became the first team to win a Test by an innings after conceding more than 500 runs in their first innings.
Joe Root and Harry Brook's centuries powered England's strong reply on Day 3 of the first Test in Multan.
New Zealand set Pakistan a tricky target of 319 and then landed two late blows to boost their hopes of a series-clinching victory in the second Test on Thursday.
Sydneysider Warner went into the current series with question marks over his form due to a lack of test runs, but a rapidfire 164 in the first innings of the opening test in Perth erased any doubts over his position in the team.
Saud Shakeel missed out on a hundred but Salman Agha smashed a brisk 79 not out to propel Pakistan to a commanding 515 for eight at tea on the second day of the contest on Tuesday.
Saud, who forged a 150-run partnership with Sarfaraz Ahmed for the fifth wicket, was unbeaten on 124, which included 17 fours.
White-ball specialist Rauf will return to Pakistan colours after incurring the wrath of the nation's cricket board for opting out of the ongoing three-Test series against Australia.
Earlier, Devon Conway fell for 92 but Tom Latham could not be denied his century after New Zealand resumed on 165 for no loss at the National Stadium.
Captain Bhoopendra Singh was subjected to court martial after a Court of Inquiry and Summary of Evidence found that troops had "exceeded" powers vested under the Armed Forces (Special Powers) Act, they said.
Dhananjaya de Silva and Angelo Mathews helped Sri Lanka to overcome a top-order collapse and reach 242-6 on Day one
Babar Azam is set to return as Pakistan skipper for their home series against New Zealand, starting April 14.
Refusing to accept the tribunal's decision, the families said they would take the matter to a higher court, seeking justice for their sons and hoping to unmask the truth behind the fateful encounter.
Pakistan's weakened pace attack in the absence of injured Shaheen Afridi, Haris Rauf and Naseem Shah, didn't offer a challenge to Conway and Latham with the new ball as both batters took New Zealand to 41-0 by tea before adding 124 more runs in the final session.
Joe Root scored his 35th Test century as he went past the legendary trio of Sunil Gavaskar, Brian Lara and Younis Khan, who had made 34 centuries in their career.
Pakistan bowlers had to break their back for the occasional success on a flat track at the National Stadium and more toil awaited them after New Zealand resumed on 440-6.
Pakistan's Super 8 qualification chance hinges on winning big in their last two games against Canada and Ireland.
Pakistan are dangerous opponents for the best of teams in major tournaments but they could face a rocky road in their quest
Nauman was denied a hat-trick by Brook, who kept England's chase going, despite Pope being bowled by Abrar and Stokes losing his wicket in a run-out following a mix-up between the batters.
Misbah said in a TV interview that despite the advice from him and Mohammad Hafeez, PCB chose to not have a relook at Pakistan's spin attack.
A washout in England-Namibia game in the same group will see Scotland go through.
Babri has in the past also worked with some players helping them understand how to handle pressure situations and get through bad performances and personal issues.
Six of the nine accused in the 2006 Malegaon bomb blasts case were on Wednesday released after a trial court in Mumbai granted them bail.
Hasan Ali, who last played a Test against Sri Lanka in Galle in July, has picked up 77 wickets in 21 Tests.
The source added that team officials and selectors had discussed Afridi's case with Pakistan Cricket Board (PCB) chief Zaka Ashraf.
Naqvi previously mentioned that a "major surgery" was required in the team after Pakistan's defeat to India
Six of the nine accused in the 2006 Malegaon bomb blasts case were on Wednesday released after a trial court in Mumbai granted them bail.
The Army has initiated general court martial proceedings against a captain for the killing of three men in a staged encounter in Amshipura in south Kashmir in July 2020 after a Court of Inquiry found that troops had 'exceeded' powers vested under the Armed Forces (Special Powers) Act, officials said in Srinagar on Sunday.
The opening Test, also played in Karachi, ended in a draw as well.
New Zealand batter Kane Williamson remains at the top of the list with 883 rating points.
The accident occurred when the car, in which Abrar Ahmed was travelling from Jaipur to Jhalawar, collided head on with a truck.
Australia out for Pakistan sweep in David Warner Week
Abrar Ahmed, suspected of planting bombs in the textile town of Malegaon that killed 31 people on September 8, was arrested on Saturday by the Anti-Terrorist Squad.
According to officials in the know of the development, the findings of a Court of Inquiry and his conviction and sentencing were confirmed by the higher Army authorities on November 11 as required under the law.
A confident and well-adjusted India would look to capitalise on an unpredictable Pakistan during Sunday's T20 World Cup match.
Latif said India have superior spinners and based on current form, Rohit Sharma's men are favourites for a win on Sunday.
The duo, who disembarked from the Swaraj Express at platform number eight of the crowded station, were about to get into an autorickshaw when they landed in police nets.
Australia head coach Andrew McDonald said the hosts would field their strongest side against Pakistan, which means a welcome return for spinner Nathan Lyon, who will chase his 500th Test wicket after injury ruled him out of the last three matches of the Ashes.
England were 7-1 at stumps with Ben Duckett (4) and Ollie Pope (3) batting together
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